I think the Phoenix is coming to reboot Cyclops. Ever since M-Day he hasnt been the same character.
In fact, maybe the Phoenix wont have to "reboot" anything/anyone at all. After this is all said and done, perhaps Beast informs cap of Cyclops' XForce team, Wolverine is kicked off the Avengers for that and his actions during AVX and Childrens Crusade, Wanda will be redeemed, Magneto will either sink or send Utopia into orbit, leaving the remaining Xmen a choice of siding with Magneto, or Wolverine. Either Cyclops dies, or is ridden with guilt or misleading the mutants, that he steps down and secludes himself into comic limbo. Alongside Prof X and Legion?